PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6529_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 261aa    MW: 28720.1 Da    PI: 6.0321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6529_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011108130123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C+ C + F ++  L  H++ H
  cra_locus_6529_iso_1_len_1625_ver_3 108 FPCNFCQRKFYSSQALGGHQNAH 130
                                          89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-6106135No hitNo description
PROSITE profilePS5015711.094108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGLLKFDLEK AATSDDNSDI CSQVASNISV QEPYLLAPRV IVSDSSQVTD LSTPISSGPF  60
ELDLSLSFKS KTDELAGKDS IGISVSSTSE SSNEPTTQTT ATAAPRVFPC NFCQRKFYSS  120
QALGGHQNAH KRERTLAKRA MRMGIFSERY ANLASLPLHG SSFRSLIKTH SSMHPGFAPS  180
GRPLYFRTNA RFEQGYLTQP IYVEEEPELL WPGSFRQVAA DRDNSQPSFI LTGSSNSNLN  240
FLEVNPSLEK DELTPDLTLR L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241479.14e-93uncharacterized protein LOC100794851
RefseqXP_006595568.14e-93PREDICTED: uncharacterized protein LOC100794851 isoform X1
RefseqXP_006595569.14e-93PREDICTED: uncharacterized protein LOC100794851 isoform X1
SwissprotQ392631e-41ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A068TZJ21e-113A0A068TZJ2_COFCA; Uncharacterized protein
STRINGGLYMA14G39280.11e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347